Download PROTEOGEST (No Summary Version)

Gerard Cagney (Conway Institute, University College Dublin, Belfield, Dublin 4, IRELAND) has modified a version or proteogist without the HTML elements involved. He found a bug in our program and here is his bug resolution and proteogist usages:

A problem in the summary file which counts things like how many peptides are in each protein and formats them in a nice html file. The counting problem is fixed but remaining bugs are in this html report part of the program....the rest works fine, so attached find a version I just made without the offending bits. If you use this with a command line like

"perl proteogest_noSummary.pl -i yourFASTA.txt -c RX,KX -a -d"

it will produce two files:

yourFASTA_simple.txt

yourFASTA_annotated.txt

Open these and you'll see they give you the digested proteomes in various formats, hopefully useful. As I say the html ("summary") enumerated and summarizes these numbers so you will have to do it yourself. (that is, to run the program on yourFASTA.txt, place that file in a directory with a copy of proteogest.noSummary.pl and run by command line)